Pulmonary Toolkit

Online Documentation for the TD Pulmonary Toolkit

Overview

• Introduction
• Getting started
• Ways of using the Pulmonary Toolkit (PTK)
• PDF tutorial guides
• Running PTK without Matlab

Installing PTK

• Installing the Pulmonary Toolkit
• Running the Pulmonary Toolkit
• Updating the Pulmonary Toolkit

Importing data

• Loading data
• Supported data and imaging formats

Visualising data

• Visualising data
• Keyboard and mouse shortcuts

Lung and lobe analysis

• Tutorial: Lobar analysis of CT data
• How to perform and correct lobe Segmentations
• Fixing lobe segmentation failures

Features

• Manual segmentations
• Parameters
• Markers
• Linked datasets
• PTKViewer
• Keyboard and mouse shortcuts
• MIV

Maintenance

• Deleting data in PTK
• Recovering disk space
• Complete reset

Plugins

• Introduction to PTK Plugins
• Running plugins
• How to develop your own Plugins
• GUI Plugins

Developer documentation

• Edited Results for manual and semi-automated correction
• Coding standards
• PTK internal directories and caches
• Unit tests
• Profiling
• MEX files
• Error and Progress Reporting
• Scripts
• Building user interfaces using PTK classes
• Octave compatibility

About PTK datatypes

• Contexts
• PTKImage
• Metrics
• PTKResultsTable

Scripting

• Running PTK from the command line

Legacy documentation

• Release notes v0.7
• Release notes v0.8
• HOW TO MIGRATE YOUR PTK CODEBASE FROM GOOGLE CODE

Additional resources

• How to cite PTK
• External Depenencies
• Sample Data
• Other software for medical imaging analysis
• Additional help topics